Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015798801.1_cds_XP_016461893.1_5487
CDS Infomation

[gene=LOC107785163] [db_xref=GeneID:107785163] [protein=zinc finger CCCH domain-containing protein 41-like] [protein_id=XP_016461893.1] [location=complement(join(73178..73729,74249..74602,75146..76369,76740..77471))] [gbkey=CDS]
Sequence

ATGGAGCTTAAAGTTTCATCTTCAAAGCCAGCACTTTTACCTTCTGATTGCAACAGTGAT
CCTGAAGAGAAAGAAATCAGTGAAGAGGATGATGATGATCGCAATCATAAGCATCGTAGG
AGAGAACTGCATTCTCAATCTGAGGAGACTGATGCCGTTGAACCAGTTTTCAGTAGACCA
TTCAGGAAACGAAAGCCTTTTAAGAATGGACATCCTTATGGTGAAGGAGATTCTCAGTTT
AGTGAAACCAGGTTCCCAAGAAGACGAGGAATGGGTTCATTTTCCAGGGCCCCTTTGGAA
TCATACCAAAGAATGAGGCTGAACCAATCACTGTCTGGTGATGCTAGTAATGGTAGGGGT
CGAGGGAGAGAACATAGTGCTTGGGCCCAACGTGATTCAAGGTTTGGCTCCGCTGATATT
GCATCTCAAATGTTTCCACAGGGCCCTGTTACTCCTGATCTCTTTACTGGAAGAGGGGTG
CAAAACGTTTCTAATGCACAGAGTTCATCTTGGAGTGCATTTGGAATGGTTCCAGGAATG
TCTAATGGCGGCCTTGATACAATTCATTCCCTTGGTTTCCAGGGAACACTCAGGCCACCC
TTGAATCCTACTGTGGGTATGGGTATTCCAAGGCAGAGATGTAGAGACTTTGAGGAGCGT
GGATTTTGCCTAAGAGGAGATATGTGCCCGATGGAGCATGGAGTAAATCGTATTGTTGTT
GAAGATGTTCAGAGCCTTTCTCAGTTTAATCTTCCTGTGTCACTTCCTAATGCACACATG
CTAGGACCAGCTACTGTAGAAGGATCTTTACCTGTGATAGGCCCTTCTGGATCATTGGTT
AGTGGCAAAGCTTTACACAACAAAATTACCAAACCTCCTGTGATTGATGATGGATTGGGT
TTGACTGATGCTTTTGTTGATGGTTCTATGGCTGGGGGAGCTGATTTTTATGATCCTGAT
CAGCCTTTATGGTCAAATGATCGTTCTGAAACTTCAGCAGTACTCCAGGATTTAAATCCA
TCTAAAATTGATGATACTGGGCCTTTGTTAGATGCAGACTCCTCTGATCATGATCAAGTT
GGGCAGTGTGATGCCTTTGAACTTGAGCATCCACTTAGAGGTGCTAAGGCAGCTTCAGGA
TCTCAGAGTGTGTGGGGAAGAATCAGAAGGTCAAAAAATAACTCGAATGTGAAAGAGATC
ACTGATTTTACAGGGGATGCTTCAAGTTTTGATGAAATGGGAAAAGATTTGGAATCGTCC
TGCAGCAATCAAGGAAACTCCCGTCCAGGGAAGCAAAAAAATGTAGATACTATTGACCCA
CAAATGACAGAATCATCTTTCAAGCCCCAAAGTAGTTCTGGACATAATATGAGAAAACCT
TCTCAAAAGGCACTTCGAACGCTGTTTGTGAGAGGCATTCCACAGAAAGACAACAAACCA
GATGCTCTTCTTTCACATTTTCAAAAATTTGGGGAGGTCATTGACATCCACATCCCACAG
AGTGGTGAACGAGCTTTTATTCAATTTTCTAAGAGAGAAGAAGCTGAGGCTGCTTTAAGG
GCACCTGATGCTGTGATCGGCAACCGTTTTATAAAGCTTTTCTGGGCAAACAGGGATAGC
ATTATGGATGATGGTTTAAATGGTGGCATTAATTTACCTTTGACTCCTCGTGGAGTAACA
TCTAGTGTGGTTCAACCCCACCTATCTGTTCCTTATAAAGGAAAAGACAATATCCAGTCC
TTAGCCTCAAAAGCTGCTGAACATGGTCCTGTTGTTCTGTTACCTACTTCTGGTCTACCT
AAGCCTGTGGCTCATAATGTTCCCAAAGCTGCACCAGCTGTGCAAAGAAAGGTGGAGAGT
TTAGAACTTTTGAAGGAAGAATTGCGCAAGAAGCAGGAGCTGCTTGATCAGAAGCGGAAT
GAGTTCCGACGTCAGTTGGTTAAACTTGAGAAGCAGGCTGTAGGTGTGAAAGCTGAAGCA
GTCTCAGACCAGGATCTGAAGAAACAGGTGGAGGGAGAAACAGTATCTTATTCTGCAAAA
ATGCAAAATTCAAGCTCCACAGAACTTAATAATGATGTATCTTCAACACAAGCTGACGCA
ATCTCTGATTGTAGCAGATCAACAGAGAATGCGGAGCGCTCTTGTTCTATATCATCTTCT
ACTGTGGCCACACAGGAACCTTCCAGCTTGAAGCAGTCAATTCGTCCACTGGCACCACAT
GGTGCACCTTTTATATTCAATAGATACAAACTAGACAATCGTCCCACTGCCTTCAAAGTT
CTTCCACCTTTGCCATGTGGTCTTGCAAATGTTGCTGTCTTGAAGGAACATTTCTCTGCT
TTTGGTGACCTTACCTCTGTTGAGCTGGAAGATTTGGAGCCTCAAGATAGTAATAATGGC
TCAGAGACGTTAAACATATCTGCTAAGATATGTTATCCAACGCGCCGGTCTGCTGAGAGG
GCATTTTTGAATGGCAAAATCTGGCAAGGCCAAGCTTTGCAGTTTATGTGGTTGCAGTCT
AGTAATTCTACCAAGGATAGTGGTGTCAGAAAAGATGCTGCTCCTGCTTTGAAGCAGCCT
TCAGATGCTAGTGTTCAACCCATCTCAAAAGATTCTTCGACTGGTTCAGAGGAAGGAAAC
ACAGCTGGGAGTGATGCACCTGAAAAAGATTACATGGAACGCGAGAAGCAGCCTTCAGAT
GCTAATGTTCAGCCCATCCCAGAAGATCCTTTGACTTGTTTACAGGAAGGAAATGCTGCA
GGGATTGATGAACCTGAAAAAGGTTATATAGAACATGCGACTGTGAATGAAGTTCCCAAC
TCCAGTTCAGCGAAACAGTTAGCTGAATGTGATCGGTCATGA

Peptide Sequence

PEP ID

XP_016461893.1
PEP Infomation

PREDICTED: zinc finger CCCH domain-containing protein 41-like [Nicotiana tabacum]
Sequence

MELKVSSSKPALLPSDCNSDPEEKEISEEDDDDRNHKHRRRELHSQSEETDAVEPVFSRP
FRKRKPFKNGHPYGEGDSQFSETRFPRRRGMGSFSRAPLESYQRMRLNQSLSGDASNGRG
RGREHSAWAQRDSRFGSADIASQMFPQGPVTPDLFTGRGVQNVSNAQSSSWSAFGMVPGM
SNGGLDTIHSLGFQGTLRPPLNPTVGMGIPRQRCRDFEERGFCLRGDMCPMEHGVNRIVV
EDVQSLSQFNLPVSLPNAHMLGPATVEGSLPVIGPSGSLVSGKALHNKITKPPVIDDGLG
LTDAFVDGSMAGGADFYDPDQPLWSNDRSETSAVLQDLNPSKIDDTGPLLDADSSDHDQV
GQCDAFELEHPLRGAKAASGSQSVWGRIRRSKNNSNVKEITDFTGDASSFDEMGKDLESS
CSNQGNSRPGKQKNVDTIDPQMTESSFKPQSSSGHNMRKPSQKALRTLFVRGIPQKDNKP
DALLSHFQKFGEVIDIHIPQSGERAFIQFSKREEAEAALRAPDAVIGNRFIKLFWANRDS
IMDDGLNGGINLPLTPRGVTSSVVQPHLSVPYKGKDNIQSLASKAAEHGPVVLLPTSGLP
KPVAHNVPKAAPAVQRKVESLELLKEELRKKQELLDQKRNEFRRQLVKLEKQAVGVKAEA
VSDQDLKKQVEGETVSYSAKMQNSSSTELNNDVSSTQADAISDCSRSTENAERSCSISSS
TVATQEPSSLKQSIRPLAPHGAPFIFNRYKLDNRPTAFKVLPPLPCGLANVAVLKEHFSA
FGDLTSVELEDLEPQDSNNGSETLNISAKICYPTRRSAERAFLNGKIWQGQALQFMWLQS
SNSTKDSGVRKDAAPALKQPSDASVQPISKDSSTGSEEGNTAGSDAPEKDYMEREKQPSD
ANVQPIPEDPLTCLQEGNAAGIDEPEKGYIEHATVNEVPNSSSAKQLAECDRS

Transcript Sequence

Gene sequence data has not been registered.